#bioinformatics
Here are all #biorxiv #mastodon subject category streams (source: https://connect.biorxiv.org/news/2023/09/27/biorxiv_expands_on_social_platforms):
(1/3)
All new papers: https://biologists.social/@biorxivpreprint
#AnimalBehavior and #Cognition: https://biologists.social/@biorxiv_behav
#Biochemistry: https://biologists.social/@biorxiv_biochem
#Bioinformatics: https://biologists.social/@biorxiv_bioinfo
#Biophysics: https://biologists.social/@biorxiv_biophys
#Cancer Biology: https://biologists.social/@biorxiv_cancer
#CellBiology: https://biologists.social/@biorxiv_cellbio
#DevelopmentalBiology: https://biologists.social/@biorxiv_devbio
Running some of our phage data through a demo #rustlang code written from scratch using ndarray & linfa decision tree algorithm, linking certain genes against putative hosts.
Wow, extremely smooth for someone with no rust experience. Compiler output's probably the most helpful I've ever seen.
#Bioinformatics #RNASeq #HiveMind
Anyone have luck identifying differential splicing with something like leafcutter for genes not detected by gene- or transcript-wise DE?
Working on some poly(A) RNA-Seq and I've run leafcutter before but never really found anything especially different from the normal DE results.
#transposons #bioinformatics people: how do you find TEs in genomic reads directly? Just count k-mers and take the most abundant ones? I can't find any obvious choice in the TE-from-reads-software out there
Thank you to everyone who is following our journey on Twitter/X.
Your interest and interactions have helped tremendously of late, whilst I've travelled through a couple of health issues – I'm on the road to recovery, and we're still aiming to GO ELECTRO! 😎
@bioinformatics @biophysics @chemistry @compchem @nmrchat @physics @strucbio
#biochemistry #bioinformatics #biology #biophysics #chemistry #CompChem #metabolomics #NMR #NMRChat #NMROnline #physics #StructuralBiology
Job at EMBL-EBI
"As Human Genomics Team Leader, you will be responsible for a multidisciplinary team of approximately 20 individuals, which includes software developers, bioinformaticians and data curators."
#sciencejobs #bioinformatics
Dear microbial bioinformaticians. I have developed a cool genomes-to-report pipeline which I have named "assemblycomparator2" for prokaryotic genomes. (I think of it as a potential successor to Nullarbor.)
I'm thinking about finishing it up with an easy-to-install conda package but I need some help to get started. Is anyone interested in testing my software and giving me some feedback on how to develop this further?
@MrHedmad I think #snakemake is one of the most important #bioinformatics projects, maybe @johanneskoester would like a hand?
Our latest newsletter, Swiss #Bioinformatics, is out!
Read more on our brand new visual identity, a project to prevent childhood #obesity, how we are enabling an unprecedented level of #datasharing and the uncovering of the #protein universe. As well as our efforts to harness Swiss #bioinformatics for #biodiversity.
Link: tinyurl.com/4s3mmf3t
Subscribe and stay up to date with the latest from SIB and its community! Link: sib.swiss/#newsletter
Any #openscience projects that need a hand in coding? I want to contribute to some projects (on Github, preferably) but I feel a bit intimidated, and I'm not sure where to start.
🦠🧬🦴 Do you work in #metagenomics (#microbiomes, #MicrobialGenomics #sedaDNA) and/or #aDNA, with interest in #bioinformatics , #OpenScience and curiosity about ancient metagenomes?
😢 The @spaam_community are struggling to find reviewers for our preprint: https://f1000research.com/articles/12-926/v1
🙏 If you would have the time to help us and be willing to review a small python tool facilitating access to public data, please
feel contact me https://www.jafy.eu/ so I can pass on your details to the journal. Thx!
30 years ago today, ExPASy.org put online 3D protein structures from PDB, for the first time ever. From the good bye lecture of Amos Bairoch, retiring from his professor position at UNIGE (he's continuing as @SIB group leader). #otd #bioinformatics #pdb #expasy
VACANCY: The Core #Bioinformatics Group at the Earlham Institute is #recruiting for a Senior #SoftwareDeveloper / Bioinformatician to develop novel tools and pipelines for large-scale #genome #annotation 🖥️
🗓️ Apply by: 10 Oct 2023
➡️ https://okt.to/lWj1dF
#hiring
Welcome @dessimoz, director of @SIB, PI of the #OMAbrowser database, and professor at #UNIL, to #MastodonScience! #bioinformatics #ComputationalBiology #orthologs
I'm looking for a new job (remote or #PDX), please boost!
I am a research software engineer with 11 years experience developing interdisciplinary scientific software that is robust, #accessible, and user-friendly.
I have experience in population genetics, #BioInformatics, #ReproducibleResearch, and #PublicHealth. My main language is #RStats, but I can also speak #Python, #JavaScript, #Lua, #C, #XML, etc.
The following thread describes why you want me on your team
1/
👏Kudos to Bastian and Nico for another great introduction to the Nextflow world!
Thanks to all attendees for joining us this week. We can't wait to see your reproducible #bioinformatics pipelines take flight!🚀
After holidays, and some head banging on burocracy, I'm back coding baby!
Finally I'll start working on Data-myr, to FAIRify our lab's data. If you want to follow along the github is https://github.com/MrHedmad/data-myr
It's in Python so feel free to contribute! After a first blanket implementation I'll use issues for my TODO, so you can see what needs to be done.
#todotoday #openscience #bioinformatics #python #coding #yayfinally
I'm very excited to share that our bacteriophage recovery tool, Phables has been accepted for publication in the OUP Bioinformatics journal.
Publication: https://doi.org/10.1093/bioinformatics/btad586
GitHub: https://github.com/Vini2/phables
A big thank you to everyone at FAME for supporting this work.
@BeardyMcJohnFace @npbhavya @griggo_grig @GB13Faithless @AbbeyHutton @Sassel1985 @linsalrob
#bioinformatics #metagenomics #bacteriophages #assembly #assemblygraph #graphtheory #flownetworks
Anyone work at a company they like that's hiring #PhD #research interns for summer 2024? Interested in roles related to #ComputerScience #DataVisualization #ExplainableAI #Genomics #Bioinformatics #SoftwareEngineering #ML #interpretability #EDA #DataAnalytics
I'm a third year PhD student in Computer Science at an R1 university (completed MS coursework), and a dual citizen USA/EU :) Thanks for boosting! #GetFediHired
“At SIB, we know that expertise in life science data is critical to solving the world's most pressing challenges.”
You can also read more on the history of our organization and the work of our members in the #SIBProfile 2023: https://issuu.com/sibswissinstituteofbioinformatics/docs/sib_profile_2023
#bioinformatics #computationalbiology #datascience #biodiversity #opendata #datascience #genomics #proteomics #programming #python #artificialintelligence #machinelearning #biocuration #biology #ecology #bigdata #cancer #scicomm
TECH NEWS…
The algorithm for the assignment of PCS-shifted spectra is now finished and tested, and yielding good results!
PLUS…
We're making solid progress refining the #NMROnline – ELECTRO codebase!
@bioinformatics @biophysics @chemistry @compchem @nmrchat @physics @strucbio
#biochemistry #bioinformatics #biology #biophysics #chemistry #CompChem #metabolomics #NMR #NMRChat #physics #SoftwareDevelopment #SoftwareEngineering #StructuralBiology #WebDev
Using a simple assumption on mutation rate distribution, we are able to estimate the time divergence between any two species by fitting only 2 free parameters.
#bacteria #evolution #bioinformatics
More details in the preprint here:
Structural phylogenetics -- a great preprint now out by Dave Moi et al, describing their elegant approach and implementation.
We were very lucky to be able to work with Foldtree, and Dave, on our recent 7TMIC paper, prior to Foldtree's release. We found it very informative when working with an extremely difficult protein superfamily!
https://www.biorxiv.org/content/10.1101/2023.09.19.558401v2
#phylogenetics #alphafold #foldseek #bioinformatics #evolution
Few things feel as good as launching massive jobs on a powerful server and bringing it down to its knees while I as a human (I mean bear) get to rest for the evening. Fun times with Sunday research sessions 🥳 🎉
Currently watching htop 😎
Using Docker 🐋 containers in your AWS ☁️ bioinformatics🧬environments? Explore my latest blog post to learn how you can enhance performance and cut costs by pushing your Docker images to ECR! 🚀 #AWS #Bioinformatics #Docker
https://lpembleton.rbind.io/posts/push-docker-to-ecr/
Our conference, #IBID2023, starts soon in #Senftenberg. From 17-19.10.23 scientists will meet in Senftenberg to exchange ideas about #neurodegenerative diseases, #aging processes, #immunology, #cancer, #bioanalytics, #bioinformatics and in vitro #testsystems. It is an open access conference (free of charge). More information is available here https://www.b-tu.de/ibid/
On my way back from #HUPO in #Busan. Really productive conference in a beautiful city. I was really glad to see #Bioinformatics get two dedicated sessions in addition to the wonderful work of the #BioinformaticsHub. Next up is a 36 hour stopover in #Ulaanbaatar and then home.
Anybody else roll those dice by activating conda environments from within their bash script? Seems to have worked pretty well for me so far. Only failed today for the first time while running the tool bismark for methylation calls. #bioinformatics #genomics
For a #bioinformatics project I needed to pull a subset of records (listed in a file) from a multi-sequence FASTA file. Couldn't find a simple tool that would do that, so I wrote one:
https://github.com/tonymugen/subsetfa
Does what it says on the label, very quickly. If you have a similar problem, give it a shot. Would love to hear about any problems.
Looking for someone to help me with molecular docking. #colaboration #bioinformatics #receptor #ligand
🐍 Join our "Introduction to Python for Biologists" course wth @Passdan this March!
🧬Unlock the power of Python for data analysis, and research. Don't miss out! Enroll today https://physalia-courses.org/courses-workshops/python2/ 📚
Postdoc fellow- Computational Biology, University of Chicago
University of Chicago
Come join us at #UChicago as a #bioinformatics postdoc, working on #human genetics and #functional genomics.
See the full job description on jobRxiv: https://jobrxiv.org/job/university-of-chicago-27778-postdoc-fellow-computational-biology-university-of-chicago/?feed_id=59335
#Scienc...
https://jobrxiv.org/job/university-of-chicago-27778-postdoc-fellow-computational-biology-university-of-chicago/?feed_id=59335
🚀 Registration for the 7th edition of the #Metabarcoding in #MicrobialEcology course is now open!
📚 Dive into the world of #Metabarcoding and #Bioinformatics with #qiime2 and #Rstats
🔗 Register here: https://www.physalia-courses.org/courses-workshops/course30/
Tenure Track Position in Theoretical Biology at Emory University in Atlanta GA.
(I'm not affiliated)
https://apply.interfolio.com/131940
#evolution #bioinformatics #jobs #Atlanta #Emory #biology
Bioinformatician needed at Agnes Scott College in Decatur GA! (I am not affiliated)
https://www.agnesscott.edu/careers/faculty-openings/biology-assistant-professor-in-bioinformatics.html
#bioinformatics #jobs #Atlanta
Postdoctoral Position with Interest in Neurogenomics/Computational Biology
UT Southwestern Medical Center
Come join us at #UTSW as a #bioinformatics postdoc to understand human brain evolution.
See the full job description on jobRxiv: https://jobrxiv.org/job/ut-southwestern-medical-center-27778-postdoctoral-position-with-interest-in-neuroge...
https://jobrxiv.org/job/ut-southwestern-medical-center-27778-postdoctoral-position-with-interest-in-neurogenomics-computational-biology/?feed_id=59250
🎉 Join us for the 2nd edition of the "Data Manipulation and Visualization with Python" course!
🗓️ Mark your calendars: October 16-29
🔗 Register here: https://physalia-courses.org/courses-workshops/course38/
🐍 Unleash your data skills! 📊🧬
#Python #DataViz #DataScience #Bioinformatics #Genomics
📢 Calling #Bioconductor community!
Our Social Media Working Group is evaluating Bioconductor presence on Twitter/X. We value your opinion! Please complete our short survey (< 5 mins) by **Tuesday, 3rd October** to help shape our communication strategies.
Another new job at WEHI, this time for a Research Software Engineer in my team! https://wehi.wd3.myworkdayjobs.com/en-US/WEHI/job/Research-Computing-Engineer--Large-data-analytics-_JR2188-3
#Bioinformatics #FediHired #GetFediHired #Hiring #RSE #RStats
Der LoupeBrowser 7.0.0 ist draußen.
https://www.10xgenomics.com/support/software/loupe-browser/downloads
:yayblob:
Endlich bekomme ich die SeuratObjekte in den LoupeBrowser importiert. 🙂
Registrations are now open for the next Winter School in #bioinformatics
We will cover a broad range of software and analyses and you will get introduced to Unix, docker genome assembly, RNAseq, phylogenomics and much more!
🔗https://www.physalia-courses.org/courses-workshops/course68/
What could go wrong?
#genomics #bioinformatics
https://www.biorxiv.org/content/10.1101/2023.09.08.556814v1
#Bioinformatics Violin Plots Should Not Exist:
I've gone live!
Crush Crush
#Biology #Bioinformatics #OneHealth #Gaming #Streaming #LifeScience #Tech #Transcriptomics #SingleCell #Genomics #Sequencing #Animals #neuhier
📢 Exciting News! 🚀 Don't miss out on this opportunity!
There are still a few seats left for our October courses. Ready to boost your data analysis skills? Join us now: https://physalia-courses.org/courses-workshops/ 💪📊
#DataAnalysis #Rstats #Genomics #Bioinformatics #Python #DataScience
Lessons learned:
1. Blogs can still be a useful source of info
2. Some topics remain useful for a very long time (even #bioinformatics explainers!)
3. Maintaining a blog is a really good way to improve your writing skills
@uncomfyhalomacro @mo8it rust-bio is a pretty good library for #bioinformatics that covers a lot of low-level functionality. You can see on the GitHub page how many different tools make use of this crate. If you're curious about how programming is essential for analyzing sequencing data (for genomics, microbiology, taxonomy, etc), this is a good place to start.
There are lots of cool #compBio tools that use #rustlang, too:
https://crates.io/crates/noodles
https://github.com/algbio/ggcat
https://github.com/10XGenomics/rust-toolbox
@mo8it i was thinking, there is this https://github.com/rust-bio/rust-bio
dunno if anyone is even using that 🥴
Any bioinformaticians help me out?
I'm looking for a server/program/whatever that, given 2 protein sequences from organism X, will go away and hunt down a few hundred equivalent sequences from other organisms, and then look at evolutionary covariance (at an amino acid level).
I'm looking to see if there is something out there that already does what I need, before going in. I'm certain there should be, but I can't find it yet.
#Bioinformatics
Calling the #opensource & #openscience #bioinformatics folks: We're currently draftin the next @OpenBio newsletter.
As always, we are looking to include some updates from the wider community. If you have anything to share, please get in touch or directly comment on this GH issue: https://github.com/OBF/newsletter/issues/29
The geneticist: Your generalist human variant detection pipeline missed this 5% heteroplasmic mitochondrial variant.
Me: Yes.
Are you interested in #metagenomics and #bioinformatics? Here is your chance to move to beautiful Ghent, Belgium for #FAIR science!
https://jobs.vib.be/j/61679/postdoctoral-scientist-meta-genomics-bioinformatics
Very interesting. Sequence-function relation is expected to be simpler than often expected, according to the preprint. I'd love to see comments or reviews on this one. #preprint #bioinformatics #protein
The simplicity of protein sequence-function relationships | bioRxiv
https://www.biorxiv.org/content/10.1101/2023.09.02.556057v1
Excellent carpentry at Guildhall venue for Northern #Bioinformatics User Group in York UK #northernBUG10
5/🧵 A small academic lab team or startup should need to hire a team of cloud engineers just to get their idea off the ground. #genomics #Bioinformatics #CloudComputing #rstats
1/🧵 Just my 2 cents, 🌐 Spent 2yrs diving into cloud based #bioinformatics 🌥️🧬, crafting pipelines & environments. Big 3 cloud providers share a similar snag. 🤔 Yes the possibilities are endless, but not everyone has that much time. I feel there is a real opportunity for a cloud provider made for life sciences 🧬🔬 Ditch the corp focus and rework it for R&D & small-to-med teams. An environment where researchers can still use the power of the command line and all their favorite tools,
In the new episode of the #bioinformatics chat #podcast, David Dylus talks about Read2Tree, a new tool that builds MSAs and phylogenetic trees straight from sequencing reads!
Hi there!
I am a biologist working in the University of Antioquia, in Medellín, Colombia. I am mostly involved in #ComputationalBiology and #Bioinformatics, but I enjoy and work in other subjects too:
- Molecular Biology
- Genetics
- Dynamical systems (ODEs)
- Systems Biology
- Microbiology
I believe in #OpenScience and I could say that #Linux and free software changed my life.
Currently I am promoting the field of Computational Biology in Colombia: https://biologia-computacional.github.io/
crosshap from my former PhD student Jacob Marsh is now out in Bioinformatics!
It's an R-based tool that visualises phenotype-haplotype-associations in a region of interest. We used it to explore population diversity around specific candidate genes; follow-up papers are under peer review.
Paper: https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/btad518/7247532
Repo: https://jacobimarsh.github.io/crosshap/
WEHI (my workplace), is hiring a Laboratory Head in Artificial Intelligence and Machine Learning: https://wehi.wd3.myworkdayjobs.com/en-US/WEHI/job/Parkville-Victoria-Australia/Laboratory-Head-Artificial-Intelligence-and-Machine-Learning_JR2157-1.
This might be of interest to someone here on fedi!
Plus, I'm personally excited for WEHI to scale up our ML focus.
@maxkennerly Ugh, I've got colleagues who do work on molecular tumor boards. What they can do is so constrained by this sort of methodolatry. It goes so far as to use the oncologist's recommendation as ground truth, regardless of the rigor of the #bioinformatics analysis, some old dude's gut takes precedence.
#introduction this is my conference tooting account. My regular account is https://scholar.social/@egonw
I am a chemist working in biology on the domains of #cheminformatics and #bioinformatics (currently) on questions in the fields of #drugDiscovery, #metabolomics, and #toxicology I strongly support #openScience
Yesterday I recorded a much-improved lecture on the rationale and methods of Label-Free Quantitation in LC-MS/MS #proteomics. I hope you enjoy it!
#bioinformatics #biostatistics
https://www.youtube.com/watch?v=AQchAPIfkGA
#SIB course:
"#Biodiversity #bioinformatics: from large-scale #phylogenomics to gene families and functions"
30.08-1.09 Lausanne #UNIL.
- key evolutionary concepts
- methodological approaches
- hands-on in comparative genomic analyses, protein-coding gene evolution and function across animal genomes, from model and non model species; using e.g. #OrthoDB, #BUSCO, #OMA @bgeedb
Trainers: @rmwaterhouse, N Glover, C Dessimoz, & me https://www.sib.swiss/training/course/20230830_COMGE #MolecularEvolution #Genomics #training
👀 Helloooo 👋🏼
New server, new #introduction
😊 I’m excited to be here! My name is Megan, I currently work on #bioinformatics as a post-bacc in a #neuroscience lab, but my passion is #psychology and the #brain and #HumanBehavior. 🧠
💻 I’ll post about #data (especially wacky data), #SciComm, or about an organization I’m volunteering for, depending on the day.🎗️
Thanks for having me! 💕
Adding - most of my posts are set to auto delete in 1 month
Enjoying this year's SciPy Conference? Join the SciPy 2023 Group just by following @scipy2023
Folks who follow the chirp.social account & mention it in a post will get their post automatically boosted!
#SciPy #ScientificPython #Science #Python #MachineLearning #Astronomy #Physics #Bioinformatics #Biology #Neuroscience #Ocean #Geo #Atmospheric #DataScience #MaterialScience #Chemistry #OpenSource #FOSS
@SciPyConf @dillonniederhut @melissawm @sirhc @joshmoore @crazy4pi314 @ivanov
Announcing #SIB Comparative genomics course, taught by Christophe Dessimoz, Natasha Glover, @rmwaterhouse and myself, 30 August - 01 September in Lausanne #UNIL
• Introduction to molecular evolution & phylogenetics
• Orthology-focused arthropod comparative genomics
• Duplication of genes and genomes, expression
with #SIB resources #OMA, #Orthodb #BUSCO and @bgeedb #ortholog #orthologs #paralog #duplication #MolecularEvolution #Genomics #bioinformatics #training @P_Palagi https://www.sib.swiss/training/course/20230830_COMGE
Hi folx! It's been a minute since I did one of my #ConnectionList #Introduction #TwitterMigration posts, where I hand-pick accounts that you might like to follow, using my reach to more richly connect the #Fediverse :fediverse:
Dr @josephguillaume is a #researcher at the @ANUFennerSchool where he specialises in #model-based #science and #decision support. Joseph was a key contributor to the @AlgFuturesLab series of workshops 👋 🇦🇺
@ANUResearch is a new arrival to #Mastodon - great to see #ANU have an official presence here! This account posts about #research and #TechnologyTransfer and #ResearchTranslation 👋 🇦🇺
Dr @michealaxelsen is a Senior Lecturer in #InformationSystems at UQ #UniQueensland 👋 🇦🇺
Prof Janet Vertesi @cyberlyra is a #professor of #sociology at #Princeton @princeton specialising in #STS 👋 🇺🇸
@erici is a #soil #science student in #Naarm / #Melbourne, who is interested in #Microbiology and #BioInformatics 👋 🇦🇺
Professor Anne Pasek @Aepasek is a Professor at #TrentUniversity where she specialises in #ClimateChange, #DigitalInfrastructure and #EnergyPolitics 👋 🇨🇦
Dr @katrinagrant is an #ArtHistorian and #DigitalHumanities #researcher at #ANU, interested in #maps, #GLAM, #landscapes, #gardens and #museums 👋 🇦🇺
@datasociety is the non-profit #research institute that studies the social implications of #data-centric technologies and #automation #STS 👋
That's all for today!
I never thought I would be working in research of COVID but here I am working in the EPIVINF project, lead by IrsiCaixa (https://www.irsicaixa.es), I'll be working in HIV, COVID and epigenetic regulation, in the #DataManagement, #multiomics and #Bioinformatics with #rstats
More info: https://www.epivinf.eu/
📣 We're redesigning the #Bioconductor website and we need YOUR input!
Whether you're a wet lab biologist, expert developer or other, your perspectives will shape Bioconductor's future. Takes 5-10 minutes. Closes Friday June 23.
Occasionally, I think about how to work effectively with #rstats. Currently, I am teaching my #bioinformatics courses with #RKWard again. I try to do most of it with packages from the base installation. #datatable is an exception. But otherwise, I like to use #within (very fast) instead of #mutate.
But there are more approaches, which are often simpler/faster/stable:
- https://github.com/matloff/TidyverseSkeptic/blob/master/RDesign.pdf
- https://davidhughjones.medium.com/dont-forget-non-tidyverse-solutions-979c870c7f3e
It's a while since I've written an #Introduction #Introductions #Connections #TwitterMigration post, where I use my large follower count to more richly connect the :fediverse:
So, please meet:
@alyssa - Alyssa is a #Linux hacker who works with #graphics drivers (THANK YOU!) and who is doing amazing things with #GPU stuff on Macs.
@adam42smith is Sebastian Karcher works in #qualitative #data at #Syracuse, and works closely with the @zotero project (also THANK YOU!)
@rachelcoldicutt researches #innovation and alternative #infrastructures, and helps build intentional #communities
@ed is Stefano Maffulli, the current Executive Director of the #OpenSource Initiative - @osi
@DianaOfPortland is Diana Larasen, and she works in #Leadership #Agility
@photocyte is Dr Tim Fallon, who is a #biologist, #biochemist and #genomics and #bioinformatics #postdoc at #UCSD
@bridgetbarrett is an incoming Assistant #Professor at CU Boulder in #Advertising - working in #MediaStudies and #SocialIdentity and #SocialMedia
Please share your own #ConnectionList - and help us create a strong and connected #Fediverse :fediverse: ❤️
@markigra Disciplines currently supported by the Find Academics on Mastodon (https://find.sciences.social/) tool:
#Anthropology
#Archaeology
#Atmospheric science and air quality
#Bioinformatics
#Communication and Media Studies
#Dendrochronology
#Earth Science
#Economics
#Education
#History and Philosophy of Science
#Islamic Studies/Middle Eastern Studies/Islamicate Studies/Oriental Studies
#Law
#Marketing and Consumer Research
#Nuclear Fusion
#Open Science
[more...]
#introduction this is my conference tooting account. My regular account is https://scholar.social/egonw
I am a chemist working in biology on the domains of #cheminformatics and #bioinformatics (currently) on questions in the fields of #drugDiscovery, #metabolomics, and #toxicology I strongly support #openScience
@robinsonmeyer I can confirm that there are disciplines here where that is the case (niche #bioinformatics topics have definitely arrived). I hope that we see more communities like that soon
Planes trains & automobiles - it's been quite a whistlestop tour across the UK but I'm excited to _almost_ be at #ABPHM for a few days of #bioinformatics, #science, #pathogens & friends!!
EVERYTHING TOGETHER & WILL WORK ON THE WEB!
#NMROnline has a growing software library, with titles integrated into seamless and efficient workflows, built with industry standards and best practices.
See you at #Euromar2023!
@bioinformatics @biophysics @chemistry @compchem @nmrchat @physics @strucbio
#biochemistry #bioinformatics #biology #biophysics #chemistry #CompChem #metabolomics #NMR #NMRChat #physics #SoftwareDevelopment #SoftwareEngineering #StructuralBiology #WebDev
I have just released
𝚋𝚒𝚘𝚌𝚙𝚙-𝚌𝚘𝚛𝚎-0.7.0
Highlights:
🐉 full support for Clang
🚬 Improved CIGARs
📦 a new container
🔍 static analysis and sanitised tests
Get it while it's hot:
https://github.com/biocpp/biocpp-core/releases/tag/0.7.0
#Bioinformatics #Science #ScienceMastodon #BioCpp #cplusplus
Hi all! I'm Joseph Szymborski, a #PhD student at McGill university studying #deeplearning models as applied to molecular biology.
Specifically, I'm working on predicting the interaction of proteins based solely on their amino acid sequence.
Follow for upcoming blog posts on topics related to #bioinformatics , molecular biology, and other generally nerdy things.
Eager to meet and share ideas with #compbio #netbio and #deeplearning people here!
@frida There is a strong R #rstats community with #RLadies and in #Bioinformatics, the #Bioconductor Community and Technical boards have women leaders: @AedinCulhane , Lori Kern-Shepherd, Charlotte @csoneson, Maria Doyle....
#introduction #how /4
So, this is how we think it works: we tell each other what we're up to and what we like/dislike, timelines will soon be full of interesting/relevant stuff 🤞
Regular or recurrent hashtags:
#semIDEEV - institutional weekly seminars #Ecology #Evolution
#CheesyFungi - research on the living stuff making your #cheese more interesting
#seXYevol - the #EvolutionaryBiology of sex chromosomes
#ShouldTryThis - new methods on #bioinformatics #popgen #Genomics
#FungiFriday
1/2 Reminder to use online health services with caution.
#BioInformatics #Data
Every day is #DataPrivacyDay
One of many examples: USA for-profit corporation Equip Health. They offer eating disorder treatment "that works delivered at home".
From privacy policy - They collect "online activity data, such as the website you visited before browsing to our website,.."
Setting aside emphasis on disease model (works best for billing services to insurance), the overall privacy policy is concerning, but not unusual for USA. It's drawn from a common playbook of taking ownership of your intimate, sensitive info, using & monetizing it.
Full quote & link follow:
#Matreex is available at https://github.com/DessimozLab/matreex #opensource #bioinformatics #phylogenomics #SIB
7 and end/thread
New preprint, by Victor Rossier with the group of Christophe Dessimoz (#UNIL and #SIB), introducing #Matreex, a new dynamic tool to scale-up the visualisation of gene families, and its application to showing loss of intraflagellar transport in a myxozoan
https://www.biorxiv.org/content/10.1101/2023.02.18.529053v1
#phylogeny #phylogenomics #bioinformatics #BigData #visualization #vizbi #myxozoan @dee_unil
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And now part 2 where I dissect a couple of #JobAd to simplify all the jargon and hidden meaning for those who are still in #academia